Type II secretion system protein J

gspJ · Escherichia coli · Taxonomy ID 562

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Summary

Primary accession: A0A4C3GMC1
Entry name: GSPJ_ECOLX
Gene: gspJ
Organism: Escherichia coli
Terminal taxonomy ID: 562
Mapped species: Escherichia coli (562)
Record type: Canonical
Sequence length: 199 amino acids

Chorus interface prediction

Residue-level probability

110: Predicted residues
55.3%: Predicted fraction
15: Contiguous sites
42: Longest site
0.976: Maximum probability
0.554184: Decision threshold

Sequence-wide probability

Raw interface-site probability at every residue.

Probability Predicted site Threshold 0.554184

0.554 threshold

0.0 · lower probability1.0 · higher probability

MKRTRAGFTL

LEMLVAIAIF

ASLALMAQQV

TNGVTRVNSA

VADHDQKLNL

MQQTMSFLTH

DLTQMMPRPV

RGDQGQREPA

LLAGAGVLAS

ESEGMRFVRG

GVVNPLMRLP

RSNLLTVGYR

IHDGYLERLA

WPLTDAAGSV

KPTMQKLIPA

DSLRLQFYDG

TRWQESWSSV

QAIPVAVRMT

LHSPQWGEIE

RIWLLRGPQ

Contact-cell shades are adjusted for white lettering; the spectrum retains the original scale. Underlined residues are predicted contacts. Hover or focus for exact probabilities.

Experimental structure inspection

Best matching PDB

Finding the best experimental PDB structure

Checking accession mappings first, then sequence similarity.

Sequence

199 amino acids

1MKRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADHDQKLNLMQQTMSFLTH60

61DLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGVVNPLMRLPRSNLLTVGYR120

121IHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDGTRWQESWSSVQAIPVAVRMT180

181LHSPQWGEIERIWLLRGPQ199

Prediction provenance

Method: Chorus
Atlas release: Chorus DB release 1
Release ID: 2026_08_30_cross_plm_x6_headline_v1
Source run: 2026_08_30_uniprot_reviewed_tm_helical_cross_plm_x6_headline_v1
Inference scope: Exact-length inference
Probability encoding: zlib+float64le
Threshold authority: SI30 validation pooled-residue positive-F1
Bulk download: pending

Sequence SHA-256: a09684a445a2e0ed95244b78817c9cdccd4fe643c0f201871e2a036def52dfc0
Probability-vector SHA-256: 8864b02dcca32019c07a49b8a88549eeda2ce30e45c5684c2cbcfb0730da7784