Chorus DBTM interface-site atlas
Chorus DB/Search result/A1A986
A1A986Canonical record

Putative transport protein YbjL

ybjL · Escherichia coli O1:K1 / APEC · Taxonomy ID 405955

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Summary

Primary accession
A1A986
Entry name
YBJL_ECOK1
Gene
ybjL
Organism
Escherichia coli O1:K1 / APEC
Terminal taxonomy ID
405955
Mapped species
Escherichia coli (562)
Record type
Canonical
Sequence length
561 amino acids

Chorus interface prediction

Residue-level probability
79
Predicted residues
14.1%
Predicted fraction
23
Contiguous sites
17
Longest site
0.942
Maximum probability
0.554184
Decision threshold

Sequence-wide probability

Raw interface-site probability at every residue.

Probability Predicted site Threshold 0.554184
Probability-colored sequence · residues 1–300 of 561
0.554 threshold
0.0 · lower probability1.0 · higher probability
MNINVAELLN
GNYILLLFVV
LALGLCLGKL
RLGSIQLGNS
IGVLVVSLLL
GQQHFSINTD
ALNLGFMLFI
FCVGVEAGPN
FFSIFFRDGK
NYLMLALVMV
GSALVIALGL
GKLFGWDIGL
TAGMLAGSMT
STPVLVGAGD
TLRHSGMESR
QLSLALDNLS
LGYALTYLIG
LVSLIVGARY
LPKLQHQDLQ
TSAQQIARER
GLDTDANRKV
YLPVIRAYRV
GPELVAWTDG
KNLRELGIYR
QTGCYIERIR
RNGILANPDG
DAVLQMGDEI
ALVGYPDAHA
RLDPSFRNGK
EVFDRDLLDM

Contact-cell shades are adjusted for white lettering; the spectrum retains the original scale. Underlined residues are predicted contacts. Hover or focus for exact probabilities.

Experimental structure inspection

Best matching PDB
Finding the best experimental PDB structure

Checking accession mappings first, then sequence similarity.

Sequence

561 amino acids
1MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSINTD60
61ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGL120
121TAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLSLGYALTYLIGLVSLIVGARY180
181LPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRVGPELVAWTDGKNLRELGIYR240
241QTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHARLDPSFRNGKEVFDRDLLDM300
301RIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGD360
361ARRVKTIADRIGFISIHSQVTDLLAFCAFFVIGLMIGMITFQFSTFSFGMGNAAGLLFAG420
421IMLGFMRANHPTFGYIPQGALSMVKEFGLMVFMAGVGLSAGSGINNGLGAIGGQMLIAGL480
481IVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAMEIISDTARSNIPALGYAGTYA540
541IANVLLTLAGTIIVMVWPGLG561

Prediction provenance

Method
Chorus
Atlas release
Chorus DB release 1
Release ID
2026_08_30_cross_plm_x6_headline_v1
Source run
2026_08_30_uniprot_reviewed_tm_helical_cross_plm_x6_headline_v1
Inference scope
Exact-length inference
Probability encoding
zlib+float64le
Threshold authority
SI30 validation pooled-residue positive-F1
Bulk download
pending
Sequence SHA-256
c5a86efcb2a124f1ad2a616b906a16c2bb38de749b6546c0741e31828499f70b
Probability-vector SHA-256
ed23a610a7044e102815f49c1cafe416794cafc216eb2917cf74f322185a58b5